A novel mitovirus detected in Diaporthe rudis, a fungus associated with Phomopsis dieback on grapevines.
Identifieur interne : 000315 ( Main/Exploration ); précédent : 000314; suivant : 000316A novel mitovirus detected in Diaporthe rudis, a fungus associated with Phomopsis dieback on grapevines.
Auteurs : Mária Kocanová [République tchèque] ; Aleš Eichmeier [République tchèque] ; Leticia Botella [République tchèque]Source :
- Archives of virology [ 1432-8798 ] ; 2020.
Descripteurs français
- KwdFr :
- Cadres ouverts de lecture (MeSH), Expression des gènes (MeSH), Génome viral (MeSH), Maladies des plantes (microbiologie), Phylogenèse (MeSH), Protéines virales (génétique), RNA replicase (génétique), Saccharomycetales (virologie), Séquençage du génome entier (MeSH), Taille du génome (MeSH), Virus fongiques (classification), Virus fongiques (génétique), Virus fongiques (isolement et purification), Vitis (microbiologie).
- MESH :
- génétique : Protéines virales, RNA replicase, Virus fongiques.
- isolement et purification : Virus fongiques.
- microbiologie : Maladies des plantes, Vitis.
- virologie : Saccharomycetales.
- Cadres ouverts de lecture, Expression des gènes, Génome viral, Phylogenèse, Séquençage du génome entier, Taille du génome.
English descriptors
- KwdEn :
- Fungal Viruses (classification), Fungal Viruses (genetics), Fungal Viruses (isolation & purification), Gene Expression (MeSH), Genome Size (MeSH), Genome, Viral (MeSH), Open Reading Frames (MeSH), Phylogeny (MeSH), Plant Diseases (microbiology), RNA Replicase (genetics), Saccharomycetales (virology), Viral Proteins (genetics), Vitis (microbiology), Whole Genome Sequencing (MeSH).
- MESH :
- chemical , genetics : RNA Replicase, Viral Proteins.
- classification : Fungal Viruses.
- genetics : Fungal Viruses.
- isolation & purification : Fungal Viruses.
- microbiology : Plant Diseases, Vitis.
- virology : Saccharomycetales.
- Gene Expression, Genome Size, Genome, Viral, Open Reading Frames, Phylogeny, Whole Genome Sequencing.
Abstract
The genome sequence of a mitovirus found in an isolate of Diaporthe rudis, one of the causal agents of Phomopsis dieback on grapevines, was determined by two high-throughput sequencing approaches, small RNA and total RNA sequencing. The genome of this mitovirus is 2,455 nt in length and includes a single large open reading frame (ORF) encoding an RNA-dependent RNA polymerase (RdRp). A BLASTx comparison of the full-length genome sequence showed the highest similarity (54.15%) with that of Colletotrichum falcatum mitovirus 1 (CfMV1). Our results reveal a new member of the genus Mitovirus first detected in D. rudis (Fr.) Nitschke, with the proposed name "Diaporthe rudis mitovirus 1" (DrMV1).
DOI: 10.1007/s00705-020-04755-8
PubMed: 32766954
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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The genome of this mitovirus is 2,455 nt in length and includes a single large open reading frame (ORF) encoding an RNA-dependent RNA polymerase (RdRp). A BLASTx comparison of the full-length genome sequence showed the highest similarity (54.15%) with that of Colletotrichum falcatum mitovirus 1 (CfMV1). Our results reveal a new member of the genus Mitovirus first detected in D. rudis (Fr.) Nitschke, with the proposed name "Diaporthe rudis mitovirus 1" (DrMV1).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">32766954</PMID><DateCompleted><Year>2020</Year><Month>09</Month><Day>22</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>22</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-8798</ISSN><JournalIssue CitedMedium="Internet"><Volume>165</Volume><Issue>10</Issue><PubDate><Year>2020</Year><Month>Oct</Month></PubDate></JournalIssue><Title>Archives of virology</Title><ISOAbbreviation>Arch Virol</ISOAbbreviation></Journal><ArticleTitle>A novel mitovirus detected in Diaporthe rudis, a fungus associated with Phomopsis dieback on grapevines.</ArticleTitle><Pagination><MedlinePgn>2405-2408</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00705-020-04755-8</ELocationID><Abstract><AbstractText>The genome sequence of a mitovirus found in an isolate of Diaporthe rudis, one of the causal agents of Phomopsis dieback on grapevines, was determined by two high-throughput sequencing approaches, small RNA and total RNA sequencing. The genome of this mitovirus is 2,455 nt in length and includes a single large open reading frame (ORF) encoding an RNA-dependent RNA polymerase (RdRp). A BLASTx comparison of the full-length genome sequence showed the highest similarity (54.15%) with that of Colletotrichum falcatum mitovirus 1 (CfMV1). Our results reveal a new member of the genus Mitovirus first detected in D. rudis (Fr.) Nitschke, with the proposed name "Diaporthe rudis mitovirus 1" (DrMV1).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kocanová</LastName><ForeName>Mária</ForeName><Initials>M</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-2650-9329</Identifier><AffiliationInfo><Affiliation>Mendeleum-Institute of Genetics, Faculty of Horticulture, Mendel University in Brno, Valticka 334, 691 44, Lednice, Czech Republic. mrs.kocanova@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Eichmeier</LastName><ForeName>Aleš</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Mendeleum-Institute of Genetics, Faculty of Horticulture, Mendel University in Brno, Valticka 334, 691 44, Lednice, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Botella</LastName><ForeName>Leticia</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Phytophthora Research Centre, Department of Forest 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sortKey="Eichmeier, Ales" sort="Eichmeier, Ales" uniqKey="Eichmeier A" first="Aleš" last="Eichmeier">Aleš Eichmeier</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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